CDS

Accession Number TCMCG007C21372
gbkey CDS
Protein Id XP_009135201.1
Location join(17328306..17328500,17328871..17328981,17329118..17329194,17329282..17329365,17329596..17329683,17329787..17329929,17330040..17331909,17332084..17332391,17332477..17332777,17332853..17333008,17333109..17333253,17333420..17333496,17333570..17333706,17333926..17334034,17334154..17334354)
Gene LOC103859423
GeneID 103859423
Organism Brassica rapa

Protein

Length 1333aa
Molecule type protein
Topology linear
Data_file_division PLN
dblink BioProject:PRJNA249065
db_source XM_009136953.3
Definition spliceosome-associated protein 130 A [Brassica rapa]

EGGNOG-MAPPER Annotation

COG_category A
Description cleavage and polyadenylation specificity factor (CPSF) A subunit
KEGG_TC -
KEGG_Module M00352        [VIEW IN KEGG]
KEGG_Reaction -
KEGG_rclass -
BRITE ko00000        [VIEW IN KEGG]
ko00001        [VIEW IN KEGG]
ko00002        [VIEW IN KEGG]
ko03021        [VIEW IN KEGG]
ko03036        [VIEW IN KEGG]
ko03041        [VIEW IN KEGG]
KEGG_ko ko:K12830        [VIEW IN KEGG]
EC -
KEGG_Pathway ko03040        [VIEW IN KEGG]
map03040        [VIEW IN KEGG]
GOs GO:0000003        [VIEW IN EMBL-EBI]
GO:0000151        [VIEW IN EMBL-EBI]
GO:0003006        [VIEW IN EMBL-EBI]
GO:0003674        [VIEW IN EMBL-EBI]
GO:0003676        [VIEW IN EMBL-EBI]
GO:0003677        [VIEW IN EMBL-EBI]
GO:0003684        [VIEW IN EMBL-EBI]
GO:0005488        [VIEW IN EMBL-EBI]
GO:0005575        [VIEW IN EMBL-EBI]
GO:0005622        [VIEW IN EMBL-EBI]
GO:0005623        [VIEW IN EMBL-EBI]
GO:0005634        [VIEW IN EMBL-EBI]
GO:0006139        [VIEW IN EMBL-EBI]
GO:0006259        [VIEW IN EMBL-EBI]
GO:0006281        [VIEW IN EMBL-EBI]
GO:0006289        [VIEW IN EMBL-EBI]
GO:0006508        [VIEW IN EMBL-EBI]
GO:0006511        [VIEW IN EMBL-EBI]
GO:0006725        [VIEW IN EMBL-EBI]
GO:0006807        [VIEW IN EMBL-EBI]
GO:0006950        [VIEW IN EMBL-EBI]
GO:0006974        [VIEW IN EMBL-EBI]
GO:0007275        [VIEW IN EMBL-EBI]
GO:0008150        [VIEW IN EMBL-EBI]
GO:0008152        [VIEW IN EMBL-EBI]
GO:0009056        [VIEW IN EMBL-EBI]
GO:0009057        [VIEW IN EMBL-EBI]
GO:0009790        [VIEW IN EMBL-EBI]
GO:0009791        [VIEW IN EMBL-EBI]
GO:0009793        [VIEW IN EMBL-EBI]
GO:0009987        [VIEW IN EMBL-EBI]
GO:0010154        [VIEW IN EMBL-EBI]
GO:0010498        [VIEW IN EMBL-EBI]
GO:0019538        [VIEW IN EMBL-EBI]
GO:0019941        [VIEW IN EMBL-EBI]
GO:0022414        [VIEW IN EMBL-EBI]
GO:0030163        [VIEW IN EMBL-EBI]
GO:0031461        [VIEW IN EMBL-EBI]
GO:0032501        [VIEW IN EMBL-EBI]
GO:0032502        [VIEW IN EMBL-EBI]
GO:0032991        [VIEW IN EMBL-EBI]
GO:0033554        [VIEW IN EMBL-EBI]
GO:0034641        [VIEW IN EMBL-EBI]
GO:0043161        [VIEW IN EMBL-EBI]
GO:0043170        [VIEW IN EMBL-EBI]
GO:0043226        [VIEW IN EMBL-EBI]
GO:0043227        [VIEW IN EMBL-EBI]
GO:0043229        [VIEW IN EMBL-EBI]
GO:0043231        [VIEW IN EMBL-EBI]
GO:0043632        [VIEW IN EMBL-EBI]
GO:0044237        [VIEW IN EMBL-EBI]
GO:0044238        [VIEW IN EMBL-EBI]
GO:0044248        [VIEW IN EMBL-EBI]
GO:0044257        [VIEW IN EMBL-EBI]
GO:0044260        [VIEW IN EMBL-EBI]
GO:0044265        [VIEW IN EMBL-EBI]
GO:0044267        [VIEW IN EMBL-EBI]
GO:0044424        [VIEW IN EMBL-EBI]
GO:0044464        [VIEW IN EMBL-EBI]
GO:0046483        [VIEW IN EMBL-EBI]
GO:0048316        [VIEW IN EMBL-EBI]
GO:0048608        [VIEW IN EMBL-EBI]
GO:0048731        [VIEW IN EMBL-EBI]
GO:0048856        [VIEW IN EMBL-EBI]
GO:0050896        [VIEW IN EMBL-EBI]
GO:0051603        [VIEW IN EMBL-EBI]
GO:0051716        [VIEW IN EMBL-EBI]
GO:0061458        [VIEW IN EMBL-EBI]
GO:0071704        [VIEW IN EMBL-EBI]
GO:0090304        [VIEW IN EMBL-EBI]
GO:0097159        [VIEW IN EMBL-EBI]
GO:1901360        [VIEW IN EMBL-EBI]
GO:1901363        [VIEW IN EMBL-EBI]
GO:1901564        [VIEW IN EMBL-EBI]
GO:1901565        [VIEW IN EMBL-EBI]
GO:1901575        [VIEW IN EMBL-EBI]
GO:1902494        [VIEW IN EMBL-EBI]
GO:1990234        [VIEW IN EMBL-EBI]

Sequence

CDS:  
ATGATGGCAGCTCCGGAGGATGAATCTTCCGCTCACTCTCAATCATCTTCTGCTGCCACTGCGACTCCCACTCCTCCTCCTTCCTCCGTAGGTGATCATTACCTCGCTAAGTGCGTCCTCCCCCCCAGCGTCGTCCTCCAGGTTGCTTATGGCTACTTCCGCTCTCCTTCCTCCCGCGACGTCGTTTTCGGAAAGGAGACCTGCCTAGAGCTGGTGGTTATAGGTGAAGATGGGTTTGTTGAATCTGTCTGTGAACAGAATGTATTCGGAACTATTAAGGATTTGGCTGTTATACCTCGGAGTAAGATGGGAAAAGACCTTTTGGCTGTTCTTTCTGATTCCGGAAAGCTCTCGTTTCTCTCATTTAGCAATGAAATGCACAGGTTCTTGCCCATACAACATGTTCAACTTTCTAGTCCAGGAAACTCGAGGACTCAACTTGGAAGAATGCTCACTGTAGATTCTAGTGGTCTCTTTCTTGCTGTCAGTGCATATCATGATCGCTTTGCTCTATTTTCCCTCTCATCATCGTCTATGGCTGATATTATTCATGAGAGGATTTTTTATCCTTCTGAAGACGGAGGGAAGACTAGCTCTGTACAAGAATTATCTGGTACTATTTGGAGCATGTGTTTCATTTCTAAAGGTTTTAATGAATCCAAGGGTTATGATCCTGTTCTTGCCATTGTTTTAAATAGGAAAGGATCTCTCCTGAATGAGTTGGTCTTATTTAGATGGAACATCAAAGAGGAATCCATATGTTTAATATCAGAGTATGTCGAAGCTGGGGCTCTAGCACATAGTATTGTTGAAGTTCCTCACTCCTCTGGATTTGCCTTTCTGTTTAGAATTGGTGACGCTCTCTTAATGGATCTCAGAGATCCTCAAAACCCTTGCTGTTTGGTTAGGACATCCTTAGATCTGGTTCCTCCTGCTTCATTAGTGGAAGAACATTTTGTTGAAGAGTCGTGTAGAGTACAAGATGGAGACGATGAGGGTCTTTCTAACGTTGCTGCATCTGCTTTGTTAAAGCTTAGCGATTGGGATCCAATGTTCATAGATACCGAAAGCGATATTGGAAAGTTGAGTTCTAAGCATGTCTCTTCATGGACTTGGGAGCCGGATCATAACTATAATCCCCGGATGATTATTTGCTTAGATGATGGTGAATTTTTCGTGTTTGAACTCATATATGAAGATGATGGTGTTAAGATTAATATATCAGAGTGTTTATACAAAGGCTTACCGTGCAAAGAAATATTATGGGTGGAAGGTGGATTCCTGGCCACGTTTTCCGAAATGGCGGATGGAACGGTTTTCAAATTGGGAAAAGAGAAGCTACATTGGATGAGTTCCATTCAAAACATTGCTCCGATCTTGGATTTCTCGGTTGTGGATGACCAGAACGAGAAACGAGACCAAATGTTTGCTTGCTGTGGCGTTACGCCTGAAGGCTCTTTAAGGATTATTCGCAGTGGCGTTAATGTAGAAAAGCTTCTGAAAACCGCGCCTGTTTATCAAGGAATAACTGGTACTTGGACTGTTAAAATGAAGCTTCCTGATGTGTACCATTCATTTCTTGTTCTGTCTTTTGTTGAGGAGACTAGGGTTTTATCAGTTGGATTAAGTTTTAAAGATGTCACTGATTCAGTTGGTTTCCAGCCTGATGTCTGCACCTTGGCCTGTGGGCTTGTTGCCGATGGTTTGTTGGTGCAGATTCACCAAGATGCAGTAAGGCTGTGCATGGCCAACATGGATGGTTCTTCACCGTTTGTCTCCTCTTGGTTTCCAGAAAATGTCAGTATCAGCTTGGGGGCAGTTGCTGAAGATCTGATAGTTGTGTCTACCTCTAACCCTTGTTTCCTGTCTGTTCTTGGGGTCAGATCAGTATCATCTCACTGCTGCGAAATCTACGAAATTCAACGGGTGGAACTGCAGTACGAAGTTTCCTGCATCTCAATCCCTCAAAAATCTATTGGGAAGAAGAGATGCAAAGCTGCGATTCTTTCTGGTATGGAGCGAGGCTATACGTTTTTGATCGGCACACATAAGCCTTCTGTTGAGGTCCTCTCCTTCTCAGAAGATGACGGTGGGGGTCTTAGAGTCCTTGCCTCTGGGATGGTATCGCTAACGAATACAATGGGAACTGCTATTCGTGGATGTATTCCTCAGGATGTAAGACTCGTGTTAGTTGATCAAGTCTATGTTCTTTCTGGGCTAAGAAATGGGATGCTGCTTCGTTTTGAGTGGCCTCCCTTTTCACATTCATCCGGCTTGAATAAAGAAGAGATGGACATAGTTGTGGGTGAAAGGGAGAATTTACCCATCGACCTTGTGTTAATTGCCACCCGACGTATAGGCATCACACCTGTTTTTCTGGTTCCGTTCAGTGATTCACTAGATTCAGATATCATAGCGCTTAGTGACAGGCCATGGTTGTTGCACACAGCTCGGCAAAGCCTTTCCTACACTTCCATCTCATTCCAAGCTTCTACTCATGCAACTCCTGTATGCTCGTCAGAATGCCCTCAAGGCATTCTTTTTGTTGCAGAGAACTCTTTACATCTGGTGGAGATGGTGCATAGCAAACGGCTTAATGCGCAAAAGTTTCACCTTGGAGGCACTCCGCGAAAGGTTATCTACCATAGTGAAAGCAAACTACTGATTGTGATGAGAACTGATCTGTGTGATGCTGGTACGTCTGATATATGCTGCGTGGACCCGCTCAGTGGATCAGTGTTGTCATCCTACAAGCTCAAACCTGGAGAAACTGGAAAATCGATGGAGCTTGTACGCGTGGGAAATGAGCAAGTCCTTGTGGTTGGGACGAGTTTGTCATCTGGTCCTGCTATACTACCCAGCGGTGAAGCAGAAAGTACAAAAGGACGAATACTCATTCTCTGCTTAGTACACACTCAAAACTCGGACAGTGGTTCAATGACAATCTGTTCAAAAGATGGTTTATCTTCCCAGCGTACATCACCTTTTCGTGATGAACAACTATCAAGTAGTAGTCTCTGCAGCAGTCCAGATGATAACAGCTACGATGATGATATCAAACTTGACGAAGCTGAAACGTGGCATTTAAAATTGGCATCTGCAACCACTTGGCCGGGTATGGTACTTGCGATCTGTCCGTACCTTGATCGTTTCTTCCTGGCGTCTGCTGGGAATGCCTTTTATGTGTGCGGTTTCCCGAACGATAGTCCTGATAAAATGAAGAGGTTTGCGGTGGGGAGGACTCGTTTCATGATAACATCTCTGCGCACGTACTTGACTAGAATCGTCGTTGGGGATTGCCGTGATGGTGTTCTGTTTTATTCTTATCATGAGGATGTGAAGAAACTTCACCAAGTATATTGTGATCCAGCGCAGCGGTTAGTTGCTGATTGCTTTCTAATGGATGTCAATTCTGTTGCTGTATCTGATCGCAAGGGGAGTATAGCTATCCTGTCTTGCAAAGATCATTCAGACTTTGAGTATTCAAATCCGGAATCCAACCTGAATCTAAACTGTGCTTATCACATGGGTGAGGTTGCCATGGCTATCAAAAAGGGTGGCAGCATTTACAAACTTCCAGCTGGTGATGTGCTGCGAAGTTATGGTCTTAGTAAAAGCACTGACGCTGCTGATGATACAATCATAGCTGGCACACTATTGGGAAGTATATTCGTCTTTGCTCCTATTTCAAGGGAGGAATATGAACTCCTAGAAGCCGTCCAAGCAAAGCTTGTGGTTCATCCGCTGACTGCTCCTGTTCTTGGTAACGATCACAAGGAGTTCCGAGGTCGAGAGAATCCGTCCCAAGCGACAAAGATTCTGGACGGTGACATGCTTGCTCAGTTCTTGGAACTTACAAATAGACAGCAGGAGTCAGTTTTATCTACACCTCAGCCGTCACCAAGCTCATTAAAAGCAAGTTCAAAACAATGTCCTTCTCCGCCTCTAATGCTGCACCAAGTTGTACAATTGCTCGAGCGTGTCCATTACGCTCTGCACTAA
Protein:  
MMAAPEDESSAHSQSSSAATATPTPPPSSVGDHYLAKCVLPPSVVLQVAYGYFRSPSSRDVVFGKETCLELVVIGEDGFVESVCEQNVFGTIKDLAVIPRSKMGKDLLAVLSDSGKLSFLSFSNEMHRFLPIQHVQLSSPGNSRTQLGRMLTVDSSGLFLAVSAYHDRFALFSLSSSSMADIIHERIFYPSEDGGKTSSVQELSGTIWSMCFISKGFNESKGYDPVLAIVLNRKGSLLNELVLFRWNIKEESICLISEYVEAGALAHSIVEVPHSSGFAFLFRIGDALLMDLRDPQNPCCLVRTSLDLVPPASLVEEHFVEESCRVQDGDDEGLSNVAASALLKLSDWDPMFIDTESDIGKLSSKHVSSWTWEPDHNYNPRMIICLDDGEFFVFELIYEDDGVKINISECLYKGLPCKEILWVEGGFLATFSEMADGTVFKLGKEKLHWMSSIQNIAPILDFSVVDDQNEKRDQMFACCGVTPEGSLRIIRSGVNVEKLLKTAPVYQGITGTWTVKMKLPDVYHSFLVLSFVEETRVLSVGLSFKDVTDSVGFQPDVCTLACGLVADGLLVQIHQDAVRLCMANMDGSSPFVSSWFPENVSISLGAVAEDLIVVSTSNPCFLSVLGVRSVSSHCCEIYEIQRVELQYEVSCISIPQKSIGKKRCKAAILSGMERGYTFLIGTHKPSVEVLSFSEDDGGGLRVLASGMVSLTNTMGTAIRGCIPQDVRLVLVDQVYVLSGLRNGMLLRFEWPPFSHSSGLNKEEMDIVVGERENLPIDLVLIATRRIGITPVFLVPFSDSLDSDIIALSDRPWLLHTARQSLSYTSISFQASTHATPVCSSECPQGILFVAENSLHLVEMVHSKRLNAQKFHLGGTPRKVIYHSESKLLIVMRTDLCDAGTSDICCVDPLSGSVLSSYKLKPGETGKSMELVRVGNEQVLVVGTSLSSGPAILPSGEAESTKGRILILCLVHTQNSDSGSMTICSKDGLSSQRTSPFRDEQLSSSSLCSSPDDNSYDDDIKLDEAETWHLKLASATTWPGMVLAICPYLDRFFLASAGNAFYVCGFPNDSPDKMKRFAVGRTRFMITSLRTYLTRIVVGDCRDGVLFYSYHEDVKKLHQVYCDPAQRLVADCFLMDVNSVAVSDRKGSIAILSCKDHSDFEYSNPESNLNLNCAYHMGEVAMAIKKGGSIYKLPAGDVLRSYGLSKSTDAADDTIIAGTLLGSIFVFAPISREEYELLEAVQAKLVVHPLTAPVLGNDHKEFRGRENPSQATKILDGDMLAQFLELTNRQQESVLSTPQPSPSSLKASSKQCPSPPLMLHQVVQLLERVHYALH